PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124697.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 555aa    MW: 62172.6 Da    PI: 5.3344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071938221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C++Cgk  s ++ L++H++
  XP_009124697.1 19 QCKHCGKQMSGWYRLRHHLS 38
                    8*****************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF049371.5E-38109253IPR007021Domain of unknown function DUF659
SuperFamilySSF530985.69E-24119523IPR012337Ribonuclease H-like domain
PfamPF056993.0E-5454544IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDIHEHGVLV GKEKRRRIQC KHCGKQMSGW YRLRHHLSGV GGDATPCVQV TSSVREMFRT  60
TTTGPKRGRT GDSEHVWCSY PNCLDFSSNG FREIMMTVSG RTIPDPHGSM FGEVLKEVED  120
HVEKVKDSWG VTGCSILLDA WVDHKGHDLV TFVADSPAGS VYLKSFDVSD IKHDSEALIS  180
IVDGLVDEVG VSNVVQIVAC SASGWVGELG EAYVGTKKGV FWSVSVSHCF ELMLMKIGEI  240
DSLGEIVEAV NMITDYVNSN PLALKLVRDQ DHSHGLLDMA VLSSEFEFFM PYLTVESIFR  300
ARDELAAMFA SSSDWNKEEE DIAISNLVND SRLWETVERV LKCSSPLIHG LIWLSSANNN  360
QHVGHVYDNM DVIKESIARE FDNDELCYMP LWDVIDDVWN KLHSPLHAAG YFLNPAAFYS  420
TGFHLDTEVA IGLISSLVHI VKELDVQVKV ATQLDVYKVR EGCFNETSQA DQVSGLSPAE  480
WWAEKASQHP ELQSFAIKVL SQTCEGASRY MLKRRVAEKL LLTRGMSRCE KQHLEELAFV  540
HYNLHLLIYR AAEPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11317KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124697.10.0PREDICTED: uncharacterized protein LOC103849730
TrEMBLA0A078I2M70.0A0A078I2M7_BRANA; BnaA01g30140D protein
STRINGBra039361.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM310534